SNP Profiles of IMC 67   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
1._GC-05-082-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
2._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
3._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
4._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
5._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
6._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
7._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
8._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
9._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
10._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
11._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
12._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
13._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
14._RUQ_1056
__GG____GT_CC_GG_AA
15._RUQ_1056
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
16._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
17._RUQ_1056
_AGGGTT___GT____CCAA
18._IMC67
__CG_________CC_
19._GC-05-82-2-33
GGAGCCAAAGCCAAAC__AAGGGGAA
20._GC-05-82-2-33
GGAGCCAAAGCCAAAC__AAGGGGAA
21._RUQ_1056
GGAGCCAAAGCCAAAC__AAGGGGAA
22._IMC_67_Fld#_152A_Plt#_1
GGAGCCAAAGCCAAAC__AAGGGGAA
23._IMC_67_Fld#_152B_Plt#_4
GGAAGGAGAGCCAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
TTAAGGCCCTCCGGAACCACGGGTCCAC
1._GC-05-082-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
2._GC-05-82-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
3._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
4._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
5._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
6._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
7._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
8._GC-05-82-2-33
TTAAGGCCCTCCGG_CCACGGGTCCAC
9._GC-05-82-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
10._GC-05-82-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
11._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
12._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
13._IMC_67
TTAAGGCCCTCCGG_CCACGGGTCCAC
14._RUQ_1056
_____CCGGAA_ACGG__AC
15._RUQ_1056
TTAAGGCCCTCCGGAACCACGGGTCCAC
16._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
17._RUQ_1056
____TTCCGG_CCACCGGTCCAC
18._IMC67
CC___CCCG___ACGG___
19._GC-05-82-2-33
AAAAGGGGAGGGCC_GGACCGAC_AC
20._GC-05-82-2-33
AAAAGGGGAGGGCC_GGACCGAC_AC
21._RUQ_1056
AAAAGGGGAGGGCC_GGACCGAC_AC
22._IMC_67_Fld#_152A_Plt#_1
AAAAGGGGAGGGCC_GGACCGAC_AC
23._IMC_67_Fld#_152B_Plt#_4
AGATCGAAAGGGCC_AAACGGCC_CC
 293031323334353637383940  
_Input profile
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
1._GC-05-082-2-33
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
2._GC-05-82-2-33
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
3._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
4._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
5._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
6._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
7._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
8._GC-05-82-2-33
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
9._GC-05-82-2-33
AAGG_CTAGCGACCTGTCCTTGGX_XX_X
10._GC-05-82-2-33
AAGG_CTAGCGACCTGTCCTTGGX_XX_X
11._IMC_67
AAGG_CTAGCGACCTGTCCTTGGX_XX_X
12._IMC_67
AAGG_CTAGCGACCTGTCCTTGGX_XX_X
13._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
14._RUQ_1056
____AG____CC__X_XX_X
15._RUQ_1056
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
16._IMC_67
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
17._RUQ_1056
AA_AACTAGCGACCTGTCC__X_XX_X
18._IMC67
__AT_AAGGACCT_AA__X_XX_X
19._GC-05-82-2-33
_GGAAAGAGCGACAGACCCTTGGX_XX_X
20._GC-05-82-2-33
_GGAAAGAGCGACAGACCCTTGGX_XX_X
21._RUQ_1056
_GGAAAGAGCGACAGACCCTTGGX_XX_X
22._IMC_67_Fld#_152A_Plt#_1
_GGAAAGAGCGACAGACCCTTGGX_XX_X
23._IMC_67_Fld#_152B_Plt#_4
_GGAAAGGGGGCCAACCACAACGX_XX_X

Input profile: IMC_67

 
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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

1._IMC_67 GC-05-082-2-33

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

3._IMC_67

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

4._IMC_67

identical
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

5._IMC_67

identical
40 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

6._IMC_67

identical
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

7._IMC_67

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

8._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

9._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

10._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

11._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

13._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._IMC_67 RUQ_1056

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._IMC_67

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

17._IMC_67 RUQ_1056

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._IMC_67 IMC67

61.5 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

50 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

38.6 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25